hspd1 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hspd1

Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family. (575 aa)

Predicted Functional Partners:

LOC103156730-2

0.999

hspa9

0.999

hspa5

0.991

LOC103141772

0.986

ENSPFOP00000014357

0.986

grpel1

0.985

LOC103145412

0.980

ENSPFOP00000005307

0.960

atp5f1b

0.959

sf3a2

0.957

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000005307	ENSPFOP00000014357	ENSPFOP00000005307	ENSPFOP00000014357	Peptidase (mitochondrial processing) alpha.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.909
ENSPFOP00000005307	LOC103141772	ENSPFOP00000005307	ENSPFOP00000006613	Peptidase (mitochondrial processing) alpha.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.909
ENSPFOP00000005307	LOC103145412	ENSPFOP00000005307	ENSPFOP00000007181	Peptidase (mitochondrial processing) alpha.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.474
ENSPFOP00000005307	LOC103156730-2	ENSPFOP00000005307	ENSPFOP00000000048	Peptidase (mitochondrial processing) alpha.	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	0.482
ENSPFOP00000005307	atp5f1b	ENSPFOP00000005307	ENSPFOP00000010989	Peptidase (mitochondrial processing) alpha.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.738
ENSPFOP00000005307	grpel1	ENSPFOP00000005307	ENSPFOP00000010631	Peptidase (mitochondrial processing) alpha.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.656
ENSPFOP00000005307	hspa9	ENSPFOP00000005307	ENSPFOP00000000304	Peptidase (mitochondrial processing) alpha.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.834
ENSPFOP00000005307	hspd1	ENSPFOP00000005307	ENSPFOP00000000054	Peptidase (mitochondrial processing) alpha.	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.960
ENSPFOP00000014357	ENSPFOP00000005307	ENSPFOP00000014357	ENSPFOP00000005307	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Peptidase (mitochondrial processing) alpha.	0.909
ENSPFOP00000014357	LOC103145412	ENSPFOP00000014357	ENSPFOP00000007181	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.933
ENSPFOP00000014357	LOC103156730-2	ENSPFOP00000014357	ENSPFOP00000000048	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	0.686
ENSPFOP00000014357	atp5f1b	ENSPFOP00000014357	ENSPFOP00000010989	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ENSPFOP00000014357	grpel1	ENSPFOP00000014357	ENSPFOP00000010631	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.477
ENSPFOP00000014357	hspa5	ENSPFOP00000014357	ENSPFOP00000019977	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.895
ENSPFOP00000014357	hspa9	ENSPFOP00000014357	ENSPFOP00000000304	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.968
ENSPFOP00000014357	hspd1	ENSPFOP00000014357	ENSPFOP00000000054	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.986
ENSPFOP00000014357	sf3a2	ENSPFOP00000014357	ENSPFOP00000016001	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Splicing factor 3a, subunit 2.	0.539
LOC103141772	ENSPFOP00000005307	ENSPFOP00000006613	ENSPFOP00000005307	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Peptidase (mitochondrial processing) alpha.	0.909
LOC103141772	LOC103145412	ENSPFOP00000006613	ENSPFOP00000007181	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.933
LOC103141772	LOC103156730-2	ENSPFOP00000006613	ENSPFOP00000000048	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Heat shock 10 protein 1; Belongs to the GroES chaperonin family.	0.686