Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plaaPhospholipase A2-activating protein. (798 aa)    
Predicted Functional Partners:
ubxn1
UBX domain protein 1.
    
 
 0.988
ENSPFOP00000009388
UBX domain protein 7.
   
 
 0.973
ENSPFOP00000006930
UBX domain protein 6.
   
 
 0.969
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.965
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.953
LOC103154164
Zgc:136908; Belongs to the AAA ATPase family.
   
 
 0.947
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.947
ubb
Ubiquitin B.
   
 0.947
ENSPFOP00000015162
Si:dkey-57h18.1.
   
 
 0.919
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 
 0.919
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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