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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plaaPhospholipase A2-activating protein. (798 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.980
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.978
ubb
Ubiquitin B.
    
 0.969
ENSPFOP00000015162
Si:dkey-57h18.1.
   
 
 0.945
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 
 0.945
LOC103134641
YOD1 deubiquitinase.
    
 
 0.938
LOC103134639
Ubiquitin thioesterase OTU1.
    
 
 0.938
ENSPFOP00000009388
UBX domain protein 7.
   
 
 0.918
faf1
Fas (TNFRSF6) associated factor 1.
   
 
 0.916
faf2
Fas associated factor family member 2.
   
 
 0.913
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.