Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
itm2bIntegral membrane protein 2Bb. (262 aa)    
Predicted Functional Partners:
LOC103140299
Amyloid beta (A4) precursor protein b.
   
 0.901
APP
Amyloid beta precursor protein.
   
 0.901
aplp2
Amyloid beta (A4) precursor-like protein 2.
   
 0.821
ENSPFOP00000002315
Transmembrane protein 59-like.
   
   0.783
tmem59
Transmembrane protein 59.
   
 
 0.765
LOC103131252
Junction plakoglobin a.
   
 
 0.750
ndufb6
NADH:ubiquinone oxidoreductase subunit B.
    
 
 0.737
ENSPFOP00000005673
Motilin receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.709
cdadc1
Cytidine and dCMP deaminase domain containing 1.
      
 0.708
ubb
Ubiquitin B.
   
 
 0.691
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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