Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sf3b1Splicing factor 3b, subunit 1. (1316 aa)    
Predicted Functional Partners:
sf3b2
Splicing factor 3b, subunit 2.
   
 0.999
sf3b4
Splicing factor 3b, subunit 4.
    
 0.999
sf3b6
Splicing factor 3b, subunit 6.
   
 0.999
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
   
 0.999
sf3b3
Splicing factor 3b, subunit 3.
   
 0.999
ENSPFOP00000016857
Splicing factor 3a, subunit 1.
   
 0.999
ENSPFOP00000016877
PHD finger protein 5A.
   
 0.999
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.999
sf3a3
Splicing factor 3a, subunit 3.
   
 0.998
sf3a2
Splicing factor 3a, subunit 2.
   
 0.998
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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