STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103130918Mesoderm specific transcript. (179 aa)    
Predicted Functional Partners:
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.821
palb2
PALB2_WD40 domain-containing protein.
  
 0.821
ENSPFOP00000005273
Malate synthase-like.
  
 
 0.813
pex5l
Peroxisomal biogenesis factor 5-like a.
   
 0.775
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
  
 0.757
ENSPFOP00000028053
AMP-binding domain-containing protein.
    
 0.751
LOC103140880
O-acyltransferase.
   
 
 0.713
soat1
O-acyltransferase.
   
 
 0.704
soat2
O-acyltransferase.
   
 
 0.704
acox3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.700
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.