STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spty2d1SPT2 chromatin protein domain containing 1. (749 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.700
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
   
 0.689
LOC103144437
UEV domain-containing protein.
  
 0.688
cul2
Cullin 2; Belongs to the cullin family.
    
 0.658
ENSPFOP00000014173
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
 0.654
LOC103155165
RAB11B, member RAS oncogene family, a.
  
 0.650
LOC103155167
RAB11B, member RAS oncogene family, b.
  
 0.650
LOC103131161
RAB11a, member RAS oncogene family.
  
 0.650
LOC103150818
RAB11a, member RAS oncogene family, like.
  
 0.650
LOC103147000
Uncharacterized protein.
  
 0.650
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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