STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbccd1TBCC domain containing 1. (588 aa)    
Predicted Functional Partners:
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
    0.704
ENSPFOP00000012456
Protein phosphatase 2, regulatory subunit B'', alpha.
    
   0.589
PPP2R3B
Protein phosphatase 2 regulatory subunit B''beta.
    
   0.589
ppp2r3c
Protein phosphatase 2, regulatory subunit B'', gamma.
    
   0.589
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.568
crtam
Uncharacterized protein.
      
 0.564
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.563
ENSPFOP00000007079
Blood vessel epicardial substance.
      
 0.561
cct7
T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
      
 0.513
cep76
Centrosomal protein 76.
   
  
 0.492
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.