Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103143641Ribosomal RNA processing 7 homolog A. (282 aa)    
Predicted Functional Partners:
nol6
Nucleolar protein 6.
   
 0.999
utp6
UTP6 small subunit processome component.
   
 0.998
ENSPFOP00000011963
WD repeat domain 46.
   
 0.997
utp4
UTP4 small subunit processome component.
   
 0.996
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.996
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.996
wdr36
WD repeat domain 36.
   
 0.995
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 0.995
tbl3
Transducin (beta)-like 3.
   
 0.995
ENSPFOP00000015249
BMS1 ribosome biogenesis factor.
   
 0.995
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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