STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103143641Ribosomal RNA processing 7 homolog A. (282 aa)    
Predicted Functional Partners:
nol6
Nucleolar protein 6.
   
 0.999
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.999
ENSPFOP00000011963
WD repeat domain 46.
   
 0.999
ENSPFOP00000015249
BMS1 ribosome biogenesis factor.
   
 0.999
ENSPFOP00000000131
Fibrillarin.
   
 0.998
wdr75
WD repeat domain 75.
   
 0.998
utp4
UTP4 small subunit processome component.
   
 0.998
wdr36
WD repeat domain 36.
   
 0.998
pdcd11
Programmed cell death 11.
   
 0.998
heatr1
HEAT repeat containing 1.
   
 0.998
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.