Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001035RING-type domain-containing protein. (340 aa)    
Predicted Functional Partners:
LOC103139698
Family with sequence similarity 162 member A.
   
 
 0.924
ENSPFOP00000016872
Uncharacterized protein.
   
 
 0.924
LOC103138172
Poly [ADP-ribose] polymerase.
   
 
 0.904
LOC103131400
Poly [ADP-ribose] polymerase.
   
 
 0.885
ENSPFOP00000021557
Poly [ADP-ribose] polymerase.
   
 
 0.885
ENSPFOP00000017355
NudC domain containing 1.
    
   0.788
ENSPFOP00000030995
RRM domain-containing protein.
   
   0.775
ENSPFOP00000003122
Notch receptor 1a.
    
 0.749
LOC103141969
Notch receptor 1b.
    
 0.749
ifih1
Interferon induced with helicase C domain 1.
   
 0.720
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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