ENSPFOP00000001035 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPFOP00000001035

RING-type domain-containing protein. (340 aa)

Predicted Functional Partners:

ENSPFOP00000003122

0.913

LOC103141969

0.913

LOC103143724

0.909

ENSPFOP00000003459

0.849

LOC103142530

0.849

LOC103139698

0.807

ENSPFOP00000016872

0.807

LOC103131400

0.737

ENSPFOP00000021557

0.737

LOC103138172

0.729

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000001035	ENSPFOP00000003122	ENSPFOP00000001035	ENSPFOP00000003122	RING-type domain-containing protein.	Notch receptor 1a.	0.913
ENSPFOP00000001035	ENSPFOP00000003459	ENSPFOP00000001035	ENSPFOP00000003459	RING-type domain-containing protein.	Uncharacterized protein.	0.849
ENSPFOP00000001035	ENSPFOP00000016872	ENSPFOP00000001035	ENSPFOP00000016872	RING-type domain-containing protein.	Uncharacterized protein.	0.807
ENSPFOP00000001035	ENSPFOP00000021557	ENSPFOP00000001035	ENSPFOP00000021557	RING-type domain-containing protein.	Poly [ADP-ribose] polymerase.	0.737
ENSPFOP00000001035	LOC103131400	ENSPFOP00000001035	ENSPFOP00000015860	RING-type domain-containing protein.	Poly [ADP-ribose] polymerase.	0.737
ENSPFOP00000001035	LOC103138172	ENSPFOP00000001035	ENSPFOP00000016854	RING-type domain-containing protein.	Poly [ADP-ribose] polymerase.	0.729
ENSPFOP00000001035	LOC103139698	ENSPFOP00000001035	ENSPFOP00000003831	RING-type domain-containing protein.	Family with sequence similarity 162 member A.	0.807
ENSPFOP00000001035	LOC103141969	ENSPFOP00000001035	ENSPFOP00000004846	RING-type domain-containing protein.	Notch receptor 1b.	0.913
ENSPFOP00000001035	LOC103142530	ENSPFOP00000001035	ENSPFOP00000017435	RING-type domain-containing protein.	Uncharacterized protein.	0.849
ENSPFOP00000001035	LOC103143724	ENSPFOP00000001035	ENSPFOP00000002712	RING-type domain-containing protein.	Notch receptor 3.	0.909
ENSPFOP00000003122	ENSPFOP00000001035	ENSPFOP00000003122	ENSPFOP00000001035	Notch receptor 1a.	RING-type domain-containing protein.	0.913
ENSPFOP00000003122	ENSPFOP00000003459	ENSPFOP00000003122	ENSPFOP00000003459	Notch receptor 1a.	Uncharacterized protein.	0.753
ENSPFOP00000003122	LOC103142530	ENSPFOP00000003122	ENSPFOP00000017435	Notch receptor 1a.	Uncharacterized protein.	0.753
ENSPFOP00000003122	LOC103143724	ENSPFOP00000003122	ENSPFOP00000002712	Notch receptor 1a.	Notch receptor 3.	0.748
ENSPFOP00000003459	ENSPFOP00000001035	ENSPFOP00000003459	ENSPFOP00000001035	Uncharacterized protein.	RING-type domain-containing protein.	0.849
ENSPFOP00000003459	ENSPFOP00000003122	ENSPFOP00000003459	ENSPFOP00000003122	Uncharacterized protein.	Notch receptor 1a.	0.753
ENSPFOP00000003459	LOC103141969	ENSPFOP00000003459	ENSPFOP00000004846	Uncharacterized protein.	Notch receptor 1b.	0.753
ENSPFOP00000003459	LOC103143724	ENSPFOP00000003459	ENSPFOP00000002712	Uncharacterized protein.	Notch receptor 3.	0.663
ENSPFOP00000016872	ENSPFOP00000001035	ENSPFOP00000016872	ENSPFOP00000001035	Uncharacterized protein.	RING-type domain-containing protein.	0.807
ENSPFOP00000016872	ENSPFOP00000021557	ENSPFOP00000016872	ENSPFOP00000021557	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.566