Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103129672Copine Va. (568 aa)    
Predicted Functional Partners:
ENSPFOP00000016828
Ribonuclease H2, subunit B.
   
 
 0.633
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.580
sergef
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.554
ENSPFOP00000020441
Fin bud initiation factor b.
      
 0.536
uba2
SUMO-activating enzyme subunit 2; The heterodimer acts as an E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2. Belongs to the ubiquitin-activating E1 family.
    
   0.530
LOC103154902
Upper zone of growth plate and cartilage matrix associated b.
      
 0.521
ush1c
Usher syndrome 1C.
      
 0.499
VAMP3
Vesicle associated membrane protein 3.
   
 
 0.454
LOC103146552
Non-specific serine/threonine protein kinase.
     
  0.452
pak2
Non-specific serine/threonine protein kinase.
     
  0.452
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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