twistnb protein (Poecilia formosa) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

twistnb

Uncharacterized protein. (376 aa)

Predicted Functional Partners:

polr2f

0.999

polr2l

0.999

POLR2E

0.999

polr1a

0.999

polr1b

0.999

ENSPFOP00000014865

0.999

ENSPFOP00000016468

0.999

ENSPFOP00000019751

0.999

polr2h

0.999

LOC103139890

0.999

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000014865	ENSPFOP00000016468	ENSPFOP00000014865	ENSPFOP00000016468	Uncharacterized protein.	CD3e molecule, epsilon associated protein.	0.996
ENSPFOP00000014865	ENSPFOP00000019751	ENSPFOP00000014865	ENSPFOP00000019751	Uncharacterized protein.	RNA polymerase I subunit E.	0.997
ENSPFOP00000014865	LOC103139890	ENSPFOP00000014865	ENSPFOP00000029199	Uncharacterized protein.	RNA polymerase I and III subunit D.	0.994
ENSPFOP00000014865	POLR2E	ENSPFOP00000014865	ENSPFOP00000005657	Uncharacterized protein.	RNA polymerase II subunit E.	0.999
ENSPFOP00000014865	polr1a	ENSPFOP00000014865	ENSPFOP00000005723	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
ENSPFOP00000014865	polr1b	ENSPFOP00000014865	ENSPFOP00000010580	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
ENSPFOP00000014865	polr2f	ENSPFOP00000014865	ENSPFOP00000000126	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
ENSPFOP00000014865	polr2h	ENSPFOP00000014865	ENSPFOP00000026857	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
ENSPFOP00000014865	polr2l	ENSPFOP00000014865	ENSPFOP00000004518	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.999
ENSPFOP00000014865	twistnb	ENSPFOP00000014865	ENSPFOP00000001074	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSPFOP00000016468	ENSPFOP00000014865	ENSPFOP00000016468	ENSPFOP00000014865	CD3e molecule, epsilon associated protein.	Uncharacterized protein.	0.996
ENSPFOP00000016468	ENSPFOP00000019751	ENSPFOP00000016468	ENSPFOP00000019751	CD3e molecule, epsilon associated protein.	RNA polymerase I subunit E.	0.999
ENSPFOP00000016468	LOC103139890	ENSPFOP00000016468	ENSPFOP00000029199	CD3e molecule, epsilon associated protein.	RNA polymerase I and III subunit D.	0.998
ENSPFOP00000016468	POLR2E	ENSPFOP00000016468	ENSPFOP00000005657	CD3e molecule, epsilon associated protein.	RNA polymerase II subunit E.	0.999
ENSPFOP00000016468	polr1a	ENSPFOP00000016468	ENSPFOP00000005723	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ENSPFOP00000016468	polr1b	ENSPFOP00000016468	ENSPFOP00000010580	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ENSPFOP00000016468	polr2f	ENSPFOP00000016468	ENSPFOP00000000126	CD3e molecule, epsilon associated protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.998
ENSPFOP00000016468	polr2h	ENSPFOP00000016468	ENSPFOP00000026857	CD3e molecule, epsilon associated protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
ENSPFOP00000016468	polr2l	ENSPFOP00000016468	ENSPFOP00000004518	CD3e molecule, epsilon associated protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.993
ENSPFOP00000016468	twistnb	ENSPFOP00000016468	ENSPFOP00000001074	CD3e molecule, epsilon associated protein.	Uncharacterized protein.	0.999