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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001088DEAH (Asp-Glu-Ala-His) box helicase 15. (727 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.986
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.980
ENSPFOP00000009459
Small nuclear ribonucleoprotein polypeptide A.
   
 0.977
rbm17
RNA binding motif protein 17.
   
 0.975
ENSPFOP00000004136
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.974
wdr43
WD repeat domain 43.
   
 0.964
ENSPFOP00000015249
BMS1 ribosome biogenesis factor.
   
 
 0.963
ENSPFOP00000021005
Sm domain-containing protein.
   
 0.962
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.961
pdcd11
Programmed cell death 11.
  
 0.961
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.