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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc90bCoiled-coil domain containing 90B. (238 aa)    
Predicted Functional Partners:
ENSPFOP00000007302
Family with sequence similarity 32 member A.
   
  
 0.592
LOC103156172
EH-domain containing 4; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
      
 0.565
ENSPFOP00000000026
NIN1 (RPN12) binding protein 1 homolog.
      
 0.563
ENSPFOP00000004565
Sidekick cell adhesion molecule 1a.
      
 0.561
ENSPFOP00000012382
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
      
 0.561
trmt1l
tRNA methyltransferase 1-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.548
rab30
RAB30, member RAS oncogene family.
      
 0.547
ENSPFOP00000025856
Uncharacterized protein.
      
 0.533
tmx1
Thioredoxin-related transmembrane protein 1.
      
 0.530
ENSPFOP00000014616
H6 family homeobox 1.
      
 0.482
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.