Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smim7Small integral membrane protein 7. (75 aa)    
Predicted Functional Partners:
cog2
Component of oligomeric golgi complex 2.
   
 0.980
cog3
Component of oligomeric golgi complex 3.
   
 0.976
LOC103151420
Component of oligomeric golgi complex 7.
   
 0.975
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.974
cog1
Component of oligomeric golgi complex 1.
   
 0.974
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.972
ENSPFOP00000026760
Component of oligomeric golgi complex 5.
   
 0.969
casc4
Cancer susceptibility candidate 4.
      
 0.904
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.889
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.888
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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