Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
apobec2Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2b. (266 aa)    
Predicted Functional Partners:
rbm47
RNA binding motif protein 47.
     
 0.827
LOC103143420
Myozenin 2a.
   
    0.792
LOC103137826
Myozenin 2b.
   
    0.792
myom2
Myomesin 2a.
   
    0.790
ENSPFOP00000006857
Uncharacterized protein.
   
    0.781
LOC103141783
SET and MYND domain containing 1b.
   
    0.781
ada
Adenosine deaminase.
   
  
 0.766
LOC103147087
Apobec1 complementation factor.
     
 0.753
LOC103152901
Uncharacterized protein.
     
 0.753
srp19
Signal recognition particle 19.
      
 0.719
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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