STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001147Si:dkey-220o5.5. (432 aa)    
Predicted Functional Partners:
ENSPFOP00000008213
Growth arrest and DNA-damage-inducible, gamma a.
    
   0.677
LOC103148363
Myc target 1b.
   
  
 0.559
plekhj1
Pleckstrin homology domain containing, family J member 1.
    
 
 0.553
gemin4
Gem (nuclear organelle) associated protein 4.
      
 0.497
vps53
VPS53 subunit of GARP complex.
      
 0.496
ENSPFOP00000001155
WD_REPEATS_REGION domain-containing protein.
      
 0.483
LOC103136810
Zinc finger protein 574.
      
 0.432
myct1
Myc target 1a.
   
  
 0.429
sdhd
Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family.
      
 0.426
DLK1
Delta like non-canonical Notch ligand 1.
      
 0.418
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
Server load: low (36%) [HD]