ENSPFOP00000001166 protein (Poecilia formosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPFOP00000001166

C-type lectin domain-containing protein. (221 aa)

Predicted Functional Partners:

LAYN

0.711

ENSPFOP00000004699

0.709

ecm1

0.690

LOC103136233

0.630

ENSPFOP00000013748

0.621

ENSPFOP00000000613

0.619

LOC103133120

0.619

tnn

0.548

LOC103154503

0.519

LOC103141903

0.519

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000613	ENSPFOP00000001166	ENSPFOP00000000613	ENSPFOP00000001166	Attractin.	C-type lectin domain-containing protein.	0.619
ENSPFOP00000000613	LAYN	ENSPFOP00000000613	ENSPFOP00000018774	Attractin.	Layilin a.	0.619
ENSPFOP00000000613	LOC103133120	ENSPFOP00000000613	ENSPFOP00000023202	Attractin.	Uncharacterized protein.	0.664
ENSPFOP00000001166	ENSPFOP00000000613	ENSPFOP00000001166	ENSPFOP00000000613	C-type lectin domain-containing protein.	Attractin.	0.619
ENSPFOP00000001166	ENSPFOP00000004699	ENSPFOP00000001166	ENSPFOP00000004699	C-type lectin domain-containing protein.	Uncharacterized protein.	0.709
ENSPFOP00000001166	ENSPFOP00000013748	ENSPFOP00000001166	ENSPFOP00000013748	C-type lectin domain-containing protein.	Inter-alpha-trypsin inhibitor heavy chain 5.	0.621
ENSPFOP00000001166	LAYN	ENSPFOP00000001166	ENSPFOP00000018774	C-type lectin domain-containing protein.	Layilin a.	0.711
ENSPFOP00000001166	LOC103133120	ENSPFOP00000001166	ENSPFOP00000023202	C-type lectin domain-containing protein.	Uncharacterized protein.	0.619
ENSPFOP00000001166	LOC103136233	ENSPFOP00000001166	ENSPFOP00000005540	C-type lectin domain-containing protein.	Layilin b.	0.630
ENSPFOP00000001166	LOC103141903	ENSPFOP00000001166	ENSPFOP00000002899	C-type lectin domain-containing protein.	Tenascin C.	0.519
ENSPFOP00000001166	LOC103154503	ENSPFOP00000001166	ENSPFOP00000000805	C-type lectin domain-containing protein.	Zmp:0000000846.	0.519
ENSPFOP00000001166	ecm1	ENSPFOP00000001166	ENSPFOP00000015923	C-type lectin domain-containing protein.	Uncharacterized protein.	0.690
ENSPFOP00000001166	tnn	ENSPFOP00000001166	ENSPFOP00000006583	C-type lectin domain-containing protein.	Tenascin N.	0.548
ENSPFOP00000004699	ENSPFOP00000001166	ENSPFOP00000004699	ENSPFOP00000001166	Uncharacterized protein.	C-type lectin domain-containing protein.	0.709
ENSPFOP00000004699	LAYN	ENSPFOP00000004699	ENSPFOP00000018774	Uncharacterized protein.	Layilin a.	0.519
ENSPFOP00000004699	LOC103136233	ENSPFOP00000004699	ENSPFOP00000005540	Uncharacterized protein.	Layilin b.	0.519
ENSPFOP00000004699	LOC103141903	ENSPFOP00000004699	ENSPFOP00000002899	Uncharacterized protein.	Tenascin C.	0.459
ENSPFOP00000004699	LOC103154503	ENSPFOP00000004699	ENSPFOP00000000805	Uncharacterized protein.	Zmp:0000000846.	0.459
ENSPFOP00000004699	tnn	ENSPFOP00000004699	ENSPFOP00000006583	Uncharacterized protein.	Tenascin N.	0.469
ENSPFOP00000013748	ENSPFOP00000001166	ENSPFOP00000013748	ENSPFOP00000001166	Inter-alpha-trypsin inhibitor heavy chain 5.	C-type lectin domain-containing protein.	0.621