LOC103141090 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103141090

Zgc:174906. (216 aa)

Predicted Functional Partners:

LOC103155772

0.585

ENSPFOP00000015912

0.546

lrguk

0.522

gak

0.497

ranbp2

0.496

F2RL2

0.483

f2rl2

0.483

mcm2

0.455

KATNAL2

0.451

mysm1

0.420

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000015912	KATNAL2	ENSPFOP00000015912	ENSPFOP00000001973	WD repeat domain 90.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.887
ENSPFOP00000015912	LOC103141090	ENSPFOP00000015912	ENSPFOP00000001173	WD repeat domain 90.	Zgc:174906.	0.546
ENSPFOP00000015912	LOC103155772	ENSPFOP00000015912	ENSPFOP00000000740	WD repeat domain 90.	NME/NM23 family member 8; Belongs to the NDK family.	0.954
ENSPFOP00000015912	gak	ENSPFOP00000015912	ENSPFOP00000009248	WD repeat domain 90.	Cyclin G associated kinase.	0.668
ENSPFOP00000015912	lrguk	ENSPFOP00000015912	ENSPFOP00000029675	WD repeat domain 90.	Leucine-rich repeats and guanylate kinase domain containing.	0.885
ENSPFOP00000015912	ranbp2	ENSPFOP00000015912	ENSPFOP00000007571	WD repeat domain 90.	RAN binding protein 2.	0.846
F2RL2	LOC103141090	ENSPFOP00000008999	ENSPFOP00000001173	Coagulation factor II thrombin receptor like 2.	Zgc:174906.	0.483
KATNAL2	ENSPFOP00000015912	ENSPFOP00000001973	ENSPFOP00000015912	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	WD repeat domain 90.	0.887
KATNAL2	LOC103141090	ENSPFOP00000001973	ENSPFOP00000001173	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Zgc:174906.	0.451
KATNAL2	LOC103155772	ENSPFOP00000001973	ENSPFOP00000000740	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	NME/NM23 family member 8; Belongs to the NDK family.	0.873
KATNAL2	lrguk	ENSPFOP00000001973	ENSPFOP00000029675	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Leucine-rich repeats and guanylate kinase domain containing.	0.402
KATNAL2	mysm1	ENSPFOP00000001973	ENSPFOP00000015240	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Myb-like, SWIRM and MPN domains 1.	0.908
KATNAL2	ranbp2	ENSPFOP00000001973	ENSPFOP00000007571	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	RAN binding protein 2.	0.780
LOC103141090	ENSPFOP00000015912	ENSPFOP00000001173	ENSPFOP00000015912	Zgc:174906.	WD repeat domain 90.	0.546
LOC103141090	F2RL2	ENSPFOP00000001173	ENSPFOP00000008999	Zgc:174906.	Coagulation factor II thrombin receptor like 2.	0.483
LOC103141090	KATNAL2	ENSPFOP00000001173	ENSPFOP00000001973	Zgc:174906.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.451
LOC103141090	LOC103155772	ENSPFOP00000001173	ENSPFOP00000000740	Zgc:174906.	NME/NM23 family member 8; Belongs to the NDK family.	0.585
LOC103141090	f2rl2	ENSPFOP00000001173	ENSPFOP00000018374	Zgc:174906.	Coagulation factor II (thrombin) receptor-like 2.	0.483
LOC103141090	gak	ENSPFOP00000001173	ENSPFOP00000009248	Zgc:174906.	Cyclin G associated kinase.	0.497
LOC103141090	lrguk	ENSPFOP00000001173	ENSPFOP00000029675	Zgc:174906.	Leucine-rich repeats and guanylate kinase domain containing.	0.522