Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rint1RAD50 interactor 1. (788 aa)    
Predicted Functional Partners:
LOC103130773
Zw10 kinetochore protein.
   
 0.999
stx18
Syntaxin 18.
    
 0.999
ENSPFOP00000011884
Neuroblastoma amplified sequence.
    
 0.999
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.996
scfd2
Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family.
   
 
 0.991
LOC103153767
Si:ch73-238c9.1.
    
 
 0.982
LOC103144502
BCL2 interacting protein 1a.
    
 0.978
LOC103139065
BCL2 interacting protein 1b.
    
 0.978
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.957
LOC103149496
SEC22 homolog B, vesicle trafficking protein a; Belongs to the synaptobrevin family.
    
 0.937
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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