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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103150493LIM-domain binding 1b. (412 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.950
LOC103148292
T-cell acute lymphocytic leukemia 1.
    
 0.940
lmo3
LIM domain only 3.
    
 0.908
LOC103139450
LIM domain only 1.
    
 0.908
LOC103149768
Uncharacterized protein.
    
 0.790
ENSPFOP00000006156
LIM homeobox 2b.
    
 0.790
lhx9
LIM homeobox 9.
    
 0.790
ENSPFOP00000015509
GATA binding protein 1a.
    
 0.773
ENSPFOP00000002887
ISL LIM homeobox 2a.
    
 0.766
LOC103141950
ISL LIM homeobox 1.
    
 0.766
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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