Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103150493LIM-domain binding 1b. (412 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.973
LOC103148292
T-cell acute lymphocytic leukemia 1.
    
 0.970
lmo3
LIM domain only 3.
    
 0.928
LOC103139450
LIM domain only 1.
    
 0.928
ENSPFOP00000002887
ISL LIM homeobox 2a.
    
 0.887
LOC103141950
ISL LIM homeobox 1.
    
 0.887
ISL2
ISL LIM homeobox 2b.
    
 0.887
rlim
Ring finger protein, LIM domain interacting.
    
 
 0.848
LOC103149768
Uncharacterized protein.
    
 0.837
ENSPFOP00000006156
LIM homeobox 2b.
    
 0.837
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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