Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phf13PHD finger protein 13. (326 aa)    
Predicted Functional Partners:
ENSPFOP00000012887
T-box transcription factor 20.
    
   0.974
mcrs1
Microspherule protein 1.
   
 0.914
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.872
LOC103132196
Biliverdin reductase A.
    
   0.845
ENSPFOP00000000730
Testis expressed 30.
    
 0.840
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.840
ENSPFOP00000002509
Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.
    
   0.773
LOC103155315
Deoxyribonuclease; Belongs to the DNase I family.
    
   0.760
LOC103152599
Deoxyribonuclease; Belongs to the DNase I family.
    
   0.760
LOC103156227
Deoxyribonuclease; Belongs to the DNase I family.
    
   0.760
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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