Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103155315Deoxyribonuclease; Belongs to the DNase I family. (316 aa)    
Predicted Functional Partners:
wipf1
WH2 domain-containing protein.
    
   0.764
phf13
PHD finger protein 13.
    
   0.760
slc25a21
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.760
ENSPFOP00000012887
T-box transcription factor 20.
    
   0.755
spcs1
Signal peptidase complex subunit 1.
    
   0.721
spcs2
Signal peptidase complex subunit 2.
    
 
 0.709
INKA2
Inka box actin regulator 2.
    
   0.705
LOC103144577
Phospholipase A(2).
   
    0.577
LOC103141376
Phospholipase A(2).
   
    0.577
LOC103132196
Biliverdin reductase A.
    
   0.570
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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