Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001205SECA_MOTOR_DEAD domain-containing protein. (1055 aa)    
Predicted Functional Partners:
ENSPFOP00000006865
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
   
 0.730
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.701
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.655
ENSPFOP00000018781
Cyclin-dependent kinase 2 interacting protein.
   
 0.655
ENSPFOP00000012380
Chromodomain protein, Y-like.
    
 
 0.609
CDYL2
Chromodomain Y like 2.
    
 
 0.609
ENSPFOP00000011898
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.581
AURKB
Aurora kinase B; Belongs to the protein kinase superfamily.
    
 
 0.556
ENSPFOP00000002713
Aurora kinase B; Belongs to the protein kinase superfamily.
    
 
 0.556
aurka
Aurora kinase A; Belongs to the protein kinase superfamily.
    
 
 0.556
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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