Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lmbrd2LMBR1 domain containing 2b. (709 aa)    
Predicted Functional Partners:
pithd1
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1.
      
 0.681
LOC103151209
FRA10A associated CGG repeat 1.
      
 0.679
ENSPFOP00000009409
Calcyphosine-like b.
 
 
  
 0.659
ENSPFOP00000005563
Phosphatidylinositol glycan anchor biosynthesis, class O.
      
 0.655
ubac1
UBA domain containing 1.
      
 0.627
ENSPFOP00000019757
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
  
 0.623
fam214a
Family with sequence similarity 214 member A.
      
 0.585
hmg20b
High mobility group 20B.
      
 0.583
ENSPFOP00000023686
DnaJ (Hsp40) homolog, subfamily C, member 22.
      
 0.580
tmtc3
TPR_REGION domain-containing protein.
   
    0.563
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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