Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103154709Neuroplastin b. (390 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
  0.540
LOC103138021
Integrin beta; Belongs to the integrin beta chain family.
   
  0.540
LOC103154101
Integrin beta.
   
  0.540
LOC103133118
Integrin beta-2-like.
   
  0.540
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
LOC103142160
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
itgbl1
Integrin, beta-like 1.
    
  0.539
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
itgb4
Integrin beta.
    
  0.539
ENSPFOP00000029475
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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