Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC103130392Serine and arginine rich splicing factor 4. (363 aa)    
Predicted Functional Partners:
ENSPFOP00000009319
Zgc:153681.
   
 0.990
LOC103149198
Serine and arginine rich splicing factor 9.
   
 0.935
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.919
LOC103137614
RRM domain-containing protein.
   
 0.919
srsf2
Serine and arginine rich splicing factor 2a.
   
 0.917
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.914
ENSPFOP00000014516
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.914
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.912
srsf10
Serine and arginine rich splicing factor 10.
   
 0.905
ENSPFOP00000028952
Aly/REF export factor.
   
 0.902
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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