Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001222Tetraspanin. (227 aa)    
Predicted Functional Partners:
ush1c
Usher syndrome 1C.
   
 0.727
ENSPFOP00000011063
Protein tyrosine phosphatase receptor type C.
     
 0.725
PTPRC
Protein tyrosine phosphatase receptor type C.
     
 0.725
zfc3h1
TPR_REGION domain-containing protein.
      
 0.715
spata20
Spermatogenesis associated 20.
      
 0.709
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.693
hdgfl2
HDGF like 2.
      
 0.664
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.658
LOC103154902
Upper zone of growth plate and cartilage matrix associated b.
      
 0.653
SPATA18
Spermatogenesis associated 18.
      
 0.647
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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