Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rec114REC114 meiotic recombination protein. (183 aa)    
Predicted Functional Partners:
MEI4
Meiotic double-stranded break formation protein 4.
    
 
 0.973
xrcc1
X-ray repair complementing defective repair in Chinese hamster cells 1.
   
 0.960
ENSPFOP00000002397
DNA ligase.
   
 0.953
ttf2
Transcription termination factor, RNA polymerase II.
  
 
 0.930
NEK9
NIMA related kinase 9.
   
  
 0.899
MEI1
Meiotic double-stranded break formation protein 1.
      
 0.893
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
    
 0.863
polb
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.863
lig4
DNA ligase.
   
 0.845
ENSPFOP00000018038
Tyrosyl-DNA phosphodiesterase 1.
    
 
 0.823
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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