Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr13WD repeat domain 13. (482 aa)    
Predicted Functional Partners:
LOC103154220
Forkhead box P3b.
      
 0.897
LOC103139046
Testis specific protein Y-linked; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.872
gcn1
GCN1 activator of EIF2AK4.
    
 
 0.766
LOC103145048
Rhodopsin.
      
 0.740
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.739
tbc1d25
TBC1 domain family, member 25.
   
  
 0.732
ENSPFOP00000017092
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
    
 
 0.719
ENSPFOP00000006187
EBP like.
      
 0.712
RHO
Rhodopsin.
      
 0.711
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 
 0.692
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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