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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103145245Protein tyrosine phosphatase 4A2b. (173 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.750
ENSPFOP00000005530
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.592
LOC103154417
Uncharacterized protein.
    
 
 0.592
cnnm3
Uncharacterized protein.
    
 
 0.592
ENSPFOP00000018964
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.592
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.590
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.590
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
 
 0.556
LOC103154558
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
   
 
  0.486
ENSPFOP00000003961
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
   
 
  0.486
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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