Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC103145245Protein tyrosine phosphatase 4A2b. (173 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
  0.956
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
   0.831
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.771
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.771
CXorf40A
Chromosome X open reading frame 40A.
    
   0.695
ENSPFOP00000005530
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.691
LOC103154417
Uncharacterized protein.
    
 
 0.691
cnnm3
Uncharacterized protein.
    
 
 0.691
ENSPFOP00000018964
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.691
rabggta
Rab geranylgeranyltransferase subunit alpha.
     
  0.576
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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