Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001264Si:ch73-132f6.5. (620 aa)    
Predicted Functional Partners:
gapdhs
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.707
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.707
ENSPFOP00000012621
Glutathione S-transferase kappa.
    
 
 0.663
uap1l1
UDP-N-acetylglucosamine pyrophosphorylase 1, like 1.
    
 
 0.656
uap1
UDP-N-acetylglucosamine pyrophosphorylase 1.
    
 
 0.656
LOC103146444
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.585
tyms
Thymidylate synthetase.
    
 0.575
nadsyn1
Glutamine-dependent NAD(+) synthetase; In the C-terminal section; belongs to the NAD synthetase family.
   
 
 0.554
tk1
Thymidine kinase.
     
 0.542
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
  0.540
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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