STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001276Collagen, type VIII, alpha 2. (691 aa)    
Predicted Functional Partners:
ENSPFOP00000028219
Uncharacterized protein.
    
  0.674
LOC103155051
Tyrosine-protein kinase.
    
 0.632
ENSPFOP00000021164
5'-nucleotidase domain containing 1.
      
 0.608
ENSPFOP00000030181
Uncharacterized protein.
      
 0.608
ENSPFOP00000015421
Collagen, type VI, alpha 1.
  
0.566
ENSPFOP00000000611
Collagen, type VIII, alpha 1b.
  
  
 
0.562
abhd10
Transgelin 3b.
      
 0.561
COL8A1
Collagen type VIII alpha 1 chain.
  
  
 
0.559
ENSPFOP00000000437
Uncharacterized protein.
  
 
0.558
col6a2
Collagen, type VI, alpha 2.
  
 
0.555
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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