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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cipcCLOCK-interacting pacemaker a. (358 aa)    
Predicted Functional Partners:
LOC103137774
Clock circadian regulator b.
    
 
 0.653
CLOCK
Clock circadian regulator a.
    
 
 0.653
ENSPFOP00000019554
Neuronal PAS domain protein 2.
    
 
 0.617
bhlhe41
Basic helix-loop-helix family, member e41.
    
 
 0.558
LOC103153072
Nuclear receptor subfamily 1, group d, member 1.
      
 0.539
LOC103144467
Circadian associated repressor of transcription a.
      
 0.539
dbp
D site albumin promoter binding protein b.
      
 0.539
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
 
 0.438
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
 
 0.438
LOC103133689
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 
 0.438
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.