Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001298Neurobeachin-like 2. (2708 aa)    
Predicted Functional Partners:
exosc3
Exosome component 3.
      
 0.668
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
      
 0.598
zmynd10
Zinc finger, MYND-type containing 10.
      
 0.564
LOC103145097
Glycoprotein IX (platelet).
      
 0.554
rabggta
Rab geranylgeranyltransferase subunit alpha.
      
 0.500
ENSPFOP00000023451
LRRCT domain-containing protein.
      
 0.499
LOC103138961
Transmembrane protein 51a.
      
 0.498
LOC103136755
Transmembrane protein 51b.
      
 0.498
mastl
Microtubule associated serine/threonine kinase-like.
      
 0.488
ENSPFOP00000004266
Uncharacterized protein.
      
 0.473
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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