Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chtf8CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (137 aa)    
Predicted Functional Partners:
dscc1
DNA replication and sister chromatid cohesion 1.
   
 0.999
ENSPFOP00000014491
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
   
 0.997
rfc4
Replication factor C (activator 1) 4.
   
 0.996
rfc5
Replication factor C (activator 1) 5.
   
 0.996
rfc3
Replication factor C (activator 1) 3.
   
 0.985
rfc2
Replication factor C (activator 1) 2.
   
 0.980
ddx11
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.
   
 
 0.952
ENSPFOP00000008634
Timeless circadian clock.
    
 
 0.949
ENSPFOP00000004704
Structural maintenance of chromosomes protein.
   
 
 0.940
tipin
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
    
 
 0.938
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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