close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (520 aa)    
Predicted Functional Partners:
ENSPFOP00000013977
Synaptonemal complex protein 3.
   
 
 0.941
LOC103145412
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.849
LOC103138540
Coproporphyrinogen oxidase.
   
  
 0.787
ENSPFOP00000006386
Trans-L-3-hydroxyproline dehydratase.
    
  0.765
ENSPFOP00000015342
Crystallin, mu.
    
  0.753
TSR1
TSR1 ribosome maturation factor.
   
    0.742
ENSPFOP00000015249
BMS1 ribosome biogenesis factor.
   
    0.713
etf1
Eukaryotic translation termination factor 1b.
   
 
 0.681
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.672
ENSPFOP00000012418
ATP-binding cassette, sub-family F (GCN20), member 2b.
  
   0.666
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.