Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001315LEM domain containing 3. (724 aa)    
Predicted Functional Partners:
LOC103152383
Mothers against decapentaplegic homolog.
    
 0.978
smad2
Mothers against decapentaplegic homolog.
    
 0.978
LOC103149303
Mothers against decapentaplegic homolog.
    
 0.978
SMAD3
Mothers against decapentaplegic homolog.
    
 0.978
ENSPFOP00000015982
Mothers against decapentaplegic homolog.
    
 0.978
smad1
Mothers against decapentaplegic homolog.
    
 0.978
LOC103131328
Uncharacterized protein.
    
 0.950
LOC103133895
Barrier to autointegration factor 1.
    
 0.950
LOC103143490
Uncharacterized protein; Belongs to the intermediate filament family.
    
 0.898
lmna
Lamin A; Belongs to the intermediate filament family.
    
 0.898
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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