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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)    
Predicted Functional Partners:
LOC103137772
FIP1 like 1b (S. cerevisiae).
   
 0.985
CPSF7
Cleavage and polyadenylation specific factor 7.
   
 0.981
cpsf6
Cleavage and polyadenylation specific factor 6.
   
 0.981
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.972
YTHDC2
YTH domain containing 2.
   
 0.964
LOC103134114
Zinc finger CCCH-type containing 6.
    
 0.946
ENSPFOP00000017251
Zinc finger CCCH-type containing 4.
    
 0.946
kiaa0232
Zgc:158564.
    
 0.944
zc3h3
Zinc finger CCCH-type containing 3.
    
 0.944
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.941
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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