Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSPFOP00000001326AVL9 homolog (S. cerevisiase). (629 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.898
rab30
RAB30, member RAS oncogene family.
      
 0.872
rab33b
RAB33B, member RAS oncogene family a.
      
 0.761
dennd10
DENN domain containing 10.
      
 0.743
dennd6a
DENN/MADD domain containing 6Aa.
      
 0.733
LOC103149291
RAB33A, member RAS oncogene family.
      
 0.731
kbtbd2
Kelch repeat and BTB (POZ) domain containing 2.
      
 0.728
ENSPFOP00000003083
UDENN domain-containing protein.
      
 0.686
dennd11
DENN domain containing 11.
      
 0.686
dennd5a
DENN/MADD domain containing 5A.
      
 0.679
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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