Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103149819One cut domain family member. (443 aa)    
Predicted Functional Partners:
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
      
 0.710
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
      
 0.680
WDR7
WD repeat domain 7.
   
  
 0.679
hnf1b
HNF1 homeobox Ba.
     
 0.645
fam214a
Family with sequence similarity 214 member A.
      
 0.637
CCNG2
Cyclin G2; Belongs to the cyclin family.
    
 
 0.588
LOC103156588
Cyclin G2; Belongs to the cyclin family.
    
 
 0.588
ENSPFOP00000020110
Neurogenin 1.
   
 0.586
orc3
Origin recognition complex, subunit 3.
    
   0.584
ENSPFOP00000007590
Pancreatic and duodenal homeobox 1.
    
 0.583
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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