LOC103152458 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103152458

ATP-binding cassette, sub-family H, member 1. (701 aa)

Predicted Functional Partners:

fkbp8

0.766

LOC103147854

0.766

LOC103152227

0.600

dhx9

0.597

LOC103141588

0.561

LOC103141589

0.561

LOC103154147

0.545

colgalt1

0.545

LOC103142535

0.545

ENSPFOP00000019819

0.545

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000019819	LOC103152458	ENSPFOP00000019819	ENSPFOP00000001338	Cerebral endothelial cell adhesion molecule.	ATP-binding cassette, sub-family H, member 1.	0.545
ENSPFOP00000019819	dhx9	ENSPFOP00000019819	ENSPFOP00000030682	Cerebral endothelial cell adhesion molecule.	DRBM domain-containing protein.	0.454
LOC103141588	LOC103141589	ENSPFOP00000008042	ENSPFOP00000008069	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103141588	LOC103152458	ENSPFOP00000008042	ENSPFOP00000001338	Uncharacterized protein.	ATP-binding cassette, sub-family H, member 1.	0.561
LOC103141589	LOC103141588	ENSPFOP00000008069	ENSPFOP00000008042	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103141589	LOC103152458	ENSPFOP00000008069	ENSPFOP00000001338	Uncharacterized protein.	ATP-binding cassette, sub-family H, member 1.	0.561
LOC103142535	LOC103152458	ENSPFOP00000017584	ENSPFOP00000001338	Collagen beta(1-O)galactosyltransferase 2.	ATP-binding cassette, sub-family H, member 1.	0.545
LOC103142535	LOC103154147	ENSPFOP00000017584	ENSPFOP00000001761	Collagen beta(1-O)galactosyltransferase 2.	Uncharacterized protein.	0.528
LOC103142535	colgalt1	ENSPFOP00000017584	ENSPFOP00000006164	Collagen beta(1-O)galactosyltransferase 2.	Collagen beta(1-O)galactosyltransferase 1.	0.528
LOC103142535	dhx9	ENSPFOP00000017584	ENSPFOP00000030682	Collagen beta(1-O)galactosyltransferase 2.	DRBM domain-containing protein.	0.454
LOC103147854	LOC103152458	ENSPFOP00000006460	ENSPFOP00000001338	Peptidylprolyl isomerase.	ATP-binding cassette, sub-family H, member 1.	0.766
LOC103147854	fkbp8	ENSPFOP00000006460	ENSPFOP00000001939	Peptidylprolyl isomerase.	Peptidylprolyl isomerase.	0.902
LOC103152227	LOC103152458	ENSPFOP00000014211	ENSPFOP00000001338	Cytochrome c oxidase assembly homolog 15 (yeast).	ATP-binding cassette, sub-family H, member 1.	0.600
LOC103152458	ENSPFOP00000019819	ENSPFOP00000001338	ENSPFOP00000019819	ATP-binding cassette, sub-family H, member 1.	Cerebral endothelial cell adhesion molecule.	0.545
LOC103152458	LOC103141588	ENSPFOP00000001338	ENSPFOP00000008042	ATP-binding cassette, sub-family H, member 1.	Uncharacterized protein.	0.561
LOC103152458	LOC103141589	ENSPFOP00000001338	ENSPFOP00000008069	ATP-binding cassette, sub-family H, member 1.	Uncharacterized protein.	0.561
LOC103152458	LOC103142535	ENSPFOP00000001338	ENSPFOP00000017584	ATP-binding cassette, sub-family H, member 1.	Collagen beta(1-O)galactosyltransferase 2.	0.545
LOC103152458	LOC103147854	ENSPFOP00000001338	ENSPFOP00000006460	ATP-binding cassette, sub-family H, member 1.	Peptidylprolyl isomerase.	0.766
LOC103152458	LOC103152227	ENSPFOP00000001338	ENSPFOP00000014211	ATP-binding cassette, sub-family H, member 1.	Cytochrome c oxidase assembly homolog 15 (yeast).	0.600
LOC103152458	LOC103154147	ENSPFOP00000001338	ENSPFOP00000001761	ATP-binding cassette, sub-family H, member 1.	Uncharacterized protein.	0.545