Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001344Si:ch211-225h24.2. (231 aa)    
Predicted Functional Partners:
fbxo38
F-box protein 38.
      
 0.900
spata2
Spermatogenesis associated 2.
      
 0.647
smoc2
SPARC related modular calcium binding 2.
      
 0.641
ENSPFOP00000018129
SPARC related modular calcium binding 1.
      
 0.641
epdr1
Ependymin related 1.
      
 0.626
klhl5
Kelch-like family member 5.
      
 0.597
LOC103136923
Kelch-like family member 4.
      
 0.597
terb1
Telomere repeat binding bouquet formation protein 1.
      
 0.584
ENSPFOP00000000240
Enolase 4.
      
 0.554
ENSPFOP00000003169
Uncharacterized protein.
      
 0.545
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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