apom protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

apom

Uncharacterized protein. (190 aa)

Predicted Functional Partners:

LOC103141588

0.762

LOC103141589

0.762

ENSPFOP00000007994

0.740

ENSPFOP00000015524

0.679

ENSPFOP00000012074

0.677

LOC103135212

0.677

cetp

0.671

LOC103154618

0.647

LOC103154818

0.639

LOC103143481

0.622

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000007994	ENSPFOP00000012074	ENSPFOP00000007994	ENSPFOP00000012074	Uncharacterized protein.	Apolipoprotein Ba.	0.779
ENSPFOP00000007994	LOC103135212	ENSPFOP00000007994	ENSPFOP00000019396	Uncharacterized protein.	Apolipoprotein Bb, tandem duplicate 2.	0.779
ENSPFOP00000007994	LOC103141588	ENSPFOP00000007994	ENSPFOP00000008042	Uncharacterized protein.	Uncharacterized protein.	0.885
ENSPFOP00000007994	LOC103141589	ENSPFOP00000007994	ENSPFOP00000008069	Uncharacterized protein.	Uncharacterized protein.	0.885
ENSPFOP00000007994	LOC103143481	ENSPFOP00000007994	ENSPFOP00000005541	Uncharacterized protein.	Apolipoprotein Ea.	0.935
ENSPFOP00000007994	LOC103154618	ENSPFOP00000007994	ENSPFOP00000007217	Uncharacterized protein.	Apolipoprotein A-Ib.	0.753
ENSPFOP00000007994	apom	ENSPFOP00000007994	ENSPFOP00000001372	Uncharacterized protein.	Uncharacterized protein.	0.740
ENSPFOP00000007994	cetp	ENSPFOP00000007994	ENSPFOP00000006271	Uncharacterized protein.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.567
ENSPFOP00000012074	ENSPFOP00000007994	ENSPFOP00000012074	ENSPFOP00000007994	Apolipoprotein Ba.	Uncharacterized protein.	0.779
ENSPFOP00000012074	LOC103135212	ENSPFOP00000012074	ENSPFOP00000019396	Apolipoprotein Ba.	Apolipoprotein Bb, tandem duplicate 2.	0.540
ENSPFOP00000012074	LOC103141588	ENSPFOP00000012074	ENSPFOP00000008042	Apolipoprotein Ba.	Uncharacterized protein.	0.991
ENSPFOP00000012074	LOC103141589	ENSPFOP00000012074	ENSPFOP00000008069	Apolipoprotein Ba.	Uncharacterized protein.	0.991
ENSPFOP00000012074	LOC103143481	ENSPFOP00000012074	ENSPFOP00000005541	Apolipoprotein Ba.	Apolipoprotein Ea.	0.917
ENSPFOP00000012074	LOC103154618	ENSPFOP00000012074	ENSPFOP00000007217	Apolipoprotein Ba.	Apolipoprotein A-Ib.	0.870
ENSPFOP00000012074	apom	ENSPFOP00000012074	ENSPFOP00000001372	Apolipoprotein Ba.	Uncharacterized protein.	0.677
ENSPFOP00000012074	cetp	ENSPFOP00000012074	ENSPFOP00000006271	Apolipoprotein Ba.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.907
ENSPFOP00000015524	apom	ENSPFOP00000015524	ENSPFOP00000001372	Kruppel-like factor 7b.	Uncharacterized protein.	0.679
LOC103135212	ENSPFOP00000007994	ENSPFOP00000019396	ENSPFOP00000007994	Apolipoprotein Bb, tandem duplicate 2.	Uncharacterized protein.	0.779
LOC103135212	ENSPFOP00000012074	ENSPFOP00000019396	ENSPFOP00000012074	Apolipoprotein Bb, tandem duplicate 2.	Apolipoprotein Ba.	0.540
LOC103135212	LOC103141588	ENSPFOP00000019396	ENSPFOP00000008042	Apolipoprotein Bb, tandem duplicate 2.	Uncharacterized protein.	0.991