Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103152384Uncharacterized protein. (82 aa)    
Predicted Functional Partners:
yipf5
Protein YIPF.
   
 
 0.716
LOC103138749
Zgc:123321.
   
 
 0.716
wdr26
WD repeat domain 26b.
      
 0.701
ENSPFOP00000009558
Selenoprotein S.
   
 
 0.679
TMEM167A
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
   
 
 0.669
tmem167a
Protein kish-A.
   
 
 0.669
mrps21
Mitochondrial ribosomal protein S21.
   
    0.665
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
  
 0.635
yipf4
Protein YIPF.
   
 
 0.634
mtmr10
Myotubularin related protein 10.
      
 0.629
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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