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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001388CAP-ZIP_m domain-containing protein. (331 aa)    
Predicted Functional Partners:
LOC103133793
WAS protein family homolog 1.
    
 
 0.807
washc3
WASH complex subunit 3.
    
 
 0.761
ENSPFOP00000018549
WASH complex subunit 5.
   
 
 0.760
washc4
WASH complex subunit 4.
   
 
 0.752
slf1
SMC5-SMC6 complex localization factor 1.
    
 
 0.648
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.648
ENSPFOP00000007276
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.644
smc5
Structural maintenance of chromosomes 5.
   
 
 0.495
topbp1
DNA topoisomerase II binding protein 1.
    
 
 0.471
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 
 0.455
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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