Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
pck1Phosphoenolpyruvate carboxykinase 1 (soluble). (637 aa)    
Predicted Functional Partners:
LOC103152461
Malate dehydrogenase.
  
 
 0.967
mdh1
Malate dehydrogenase.
  
 
 0.967
LOC103146450
Enolase 2.
     
 0.965
ENSPFOP00000014358
Enolase 1a, (alpha).
     
 0.965
eno2
Uncharacterized protein.
     
 0.965
ENSPFOP00000016276
Enolase 3, (beta, muscle).
     
 0.965
LOC103137853
Enolase 1b, (alpha).
     
 0.965
LOC103136570
Malate dehydrogenase.
    
 0.965
ENSPFOP00000000240
Enolase 4.
     
 0.961
PC
Pyruvate carboxylase b.
  
 
 0.950
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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