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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103155965Nipsnap homolog 3A (C. elegans). (256 aa)    
Predicted Functional Partners:
ENSPFOP00000017768
Methenyltetrahydrofolate synthetase domain containing.
   
    0.744
ENSPFOP00000014553
UTP15 small subunit processome component.
   
    0.648
wdr6
WD repeat domain 6.
   
    0.646
psmd1
26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.
   
    0.646
nop56
NOP56 ribonucleoprotein homolog.
   
    0.635
ENSPFOP00000008463
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
   
  0.596
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 
  0.585
ENSPFOP00000003361
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
    
  0.574
ripk4
Receptor-interacting serine-threonine kinase 4.
    
  0.574
LOC103154164
Zgc:136908; Belongs to the AAA ATPase family.
   
  0.565
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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