Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDLRAD3Low density lipoprotein receptor class A domain containing 3. (350 aa)    
Predicted Functional Partners:
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.793
b4galt7
Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).
    
 
 0.738
ENSPFOP00000007356
Intersectin 2a.
    
 0.712
ENSPFOP00000011660
Intersectin 2b.
    
 0.712
LOC103144338
Uncharacterized protein.
      
 0.709
mxra8
Matrix-remodelling associated 8b.
      
 0.709
sumf2
Sulfatase modifying factor 2.
     
 0.679
ENSPFOP00000013033
Si:ch211-156l18.8.
      
 0.640
phb
Prohibitin.
      
 0.613
ENSPFOP00000013155
RPGRIP1 like.
    
 
 0.591
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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