STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000001437EPS8-like 3a. (653 aa)    
Predicted Functional Partners:
ENSPFOP00000000899
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.797
cask
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.797
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
      
 0.667
fcsk
Fucose kinase.
      
 0.627
ENSPFOP00000005869
Vac14 homolog (S. cerevisiae).
      
 0.621
cog4
Component of oligomeric golgi complex 4.
      
 0.602
rpl21
Ribosomal protein L21.
      
 0.584
ush1c
Usher syndrome 1C.
   
 
 0.580
sf3b3
Splicing factor 3b, subunit 3.
      
 0.522
ENSPFOP00000011844
TSR2 ribosome maturation factor.
      
 0.499
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.