Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC103145250Arf-GAP domain-containing protein. (477 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
    
 
 0.719
arfgap1
ADP-ribosylation factor GTPase activating protein 1.
    
 
 0.605
ENSPFOP00000029365
Synaptojanin 1.
    
 
 0.594
ENSPFOP00000019047
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
     
  0.571
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
    
   0.544
gak
Cyclin G associated kinase.
   
 
 0.527
rbp2
Retinol binding protein 2a, cellular; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.499
tbcd
Tubulin folding cofactor D.
      
 0.498
sdhaf3
Succinate dehydrogenase complex assembly factor 3.
    
  0.497
ENSPFOP00000004696
ENTH domain-containing protein.
   
   0.455
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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